PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.001G367500.1
Common NamePOPTR_0001s37620g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NF-YB
Protein Properties Length: 168aa    MW: 18193.2 Da    PI: 4.756
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.001G367500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB181.38.4e-5723118297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         re drflP+anvsrimkk+lPanakisk+aketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yveplkvyl+++re
  Potri.001G367500.1  23 REMDRFLPVANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQRFRE 113
                         799**************************************************************************************** PP

               NF-YB  93 legek 97 
                         +egek
  Potri.001G367500.1 114 MEGEK 118
                         ***97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.5E-5319126IPR009072Histone-fold
SuperFamilySSF471135.59E-4126152IPR009072Histone-fold
PfamPF008082.2E-272892IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006155.6E-215674No hitNo description
PROSITE patternPS0068505975IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.6E-217593No hitNo description
PRINTSPR006155.6E-2194112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MADSDNDSGG QNPTSTNELF SPREMDRFLP VANVSRIMKK ALPANAKISK EAKETVQECV  60
SEFISFITGE ASDKCQREKR KTINGDDLLW AMTTLGFEEY VEPLKVYLQR FREMEGEKNT  120
VARDRDAPSN GSGPGAEGFS GYVYGSGAGF FNQMGGGGAG DSLGRLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_B3e-4623113292Transcription factor HapC (Eurofung)
4g91_B3e-4623113292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2140280.0AC214028.1 Populus trichocarpa clone POP025-N21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002298867.11e-121hypothetical protein POPTR_0001s37620g
SwissprotO233103e-70NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLB9GFM01e-121B9GFM0_POPTR; Uncharacterized protein
STRINGPOPTR_0001s37620.11e-120(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Representative plantOGRP16817170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.11e-71nuclear factor Y, subunit B3